MolNFT v1 · #174047 · protein

Inulosucrase from halalkalicoccus jeotgali

7BJ5 · Levansucrase: “Inulosucrase from halalkalicoccus jeotgali”. X-ray diffraction, 20 pockets (best druggability 0.75). MolNFT v1 #174047 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7BJ5
Type: protein
Length: 4,060 residues
Chains: 10
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Levansucrase
UniProt: D8J9C2
Pockets: 20 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, I, J	Levansucrase	protein	406	6% helix, 43% strand	D8J9C2

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	693	0.75	0.81	98	empty
2	990	0.74	0.77	106	empty
3	816	0.73	0.78	92	empty
4	724	0.72	0.79	89	empty
5	569	0.70	0.79	71	empty

Interfaces

13 interfaces between chains.

I–J · 634 Å² buried · 17 hydrogen bonds · protein-protein
A–H · 612 Å² buried · 13 hydrogen bonds · protein-protein
B–D · 607 Å² buried · 5 hydrogen bonds · protein-protein
E–H · 599 Å² buried · 5 hydrogen bonds · protein-protein
A–J · 584 Å² buried · 3 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 10 disulfide (disulfide).

Compared structures

7BJ5 · Inulosucrase from Halalkalicoccus jeotgali · the same entry in another collection · chain C against C, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D8J9C2
Elsewhere: RCSB PDB 7BJ5 · PDBe 7BJ5 · UniProt D8J9C2

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