MolNFT v1 · #174036 · protein

Xfel crystal structure of cytochrome C peroxidase compound II

7BIU · Cytochrome C peroxidase, mitochondrial: “Xfel crystal structure of cytochrome C peroxidase compound II”. X-ray diffraction, 1 ligand (HEC), 2 pockets (best druggability 0.80). MolNFT v1 #174036 on GenesisL1: 3D structure, binding…

PDB: 7BIU
Type: protein
Length: 292 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C peroxidase, mitochondrial
UniProt: A0A6V8S829
Ligands: HEC
Pockets: 2 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 51% helix, 8% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C peroxidase, mitochondrial	protein	292	51% helix, 8% strand	A0A6V8S829

Ligands and binding sites

HEC · Heme C · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	332	0.80	0.90	47	HEC
2	95	0.42	0.78	17	empty

Compared structures

7BIU · XFEL crystal structure of cytochrome c peroxidase compound II · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A6V8S829
Elsewhere: RCSB PDB 7BIU · PDBe 7BIU · UniProt A0A6V8S829

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