MolNFT v1 · #173915 · protein

Glyceraldehyde 3-phosphate dehydrogenase from campylobacter jejeuni - NAD(P) complex

7BEW · Glyceraldehyde-3-phosphate dehydrogenase: “Glyceraldehyde 3-phosphate dehydrogenase from campylobacter jejeuni - NAD(P) complex”. X-ray diffraction, 2 ligands (NAP, NA), 1 pocket (best druggability 0.64). MolNFT v1 #173915 on…

PDB: 7BEW
Type: protein
Length: 330 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glyceraldehyde-3-phosphate dehydrogenase
EC: 1.2.1.-, 1.2.1.5, 1.2.1.12, 1.2.1.13
UniProt: Q0P8L1
Ligands: NAP, NA
Pockets: 1 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.-, 1.2.1.5, 1.2.1.12, 1.2.1.13)	protein	330	29% helix, 27% strand	Q0P8L1

Ligands and binding sites

NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
NA · Sodium ion · metal · 2 copies · chains A
PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	532	0.64	0.76	55	NAP

Compared structures

7BEW · Glyceraldehyde 3-phosphate dehydrogenase from Campylobacter jejeuni - NAD(P) complex · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q0P8L1
Elsewhere: RCSB PDB 7BEW · PDBe 7BEW · UniProt Q0P8L1

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