MolNFT v1 · #173904 · protein
Crystal structure of the receptor binding domain of SARS-cov-2 spike glycoprotein in a ternary complex with covox-88 and covox-45 fabs
7BEL: “Crystal structure of the receptor binding domain of SARS-cov-2 spike glycoprotein in a ternary complex with…”. X-ray diffraction, 3 ligands (NAG, MAN, BMA). MolNFT v1 #173904 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7BEL
- Type
- protein
- Length
- 1,728 residues
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, MAN, BMA
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| R, X | — | protein | 194 | — | P0DTC2 |
| A, C | — | protein | 216 | — | — |
| H, E | — | protein | 128 | — | — |
| L, F | — | protein | 113 | — | — |
| B, D | — | protein | 213 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains R, H, X, E
- MAN · alpha-D-mannopyranose · sugar · 6 copies · chains R, F
- BMA · beta-D-mannopyranose · sugar · 2 copies · chains X
- ACT · Acetate ion · additive · 3 copies · chains R, A, X, C
- GOL · Glycerol · additive · chains R
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7BEL · Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in a… · the same entry in another collection · chain R against R, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7BEL · PDBe 7BEL · UniProt P0DTC2
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