MolNFT v1 · #173894 · protein

Kashmir bee virus empty particle at acidic pH

7BE9 · Structural polyprotein: “Kashmir bee virus empty particle at acidic pH”. Electron microscopy, 10 pockets (best druggability 0.65). MolNFT v1 #173894 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7BE9
Type: protein
Length: 664 residues
Chains: 3
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Structural polyprotein
UniProt: Q80AG2
Pockets: 10 · best druggability 0.65

Structure

electron microscopy · 3 distinct chains · 10% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Structural polyprotein	protein	188	16% helix, 35% strand	Q80AG2
C	Structural polyprotein	protein	280	6% helix, 32% strand	Q80AG2
B	Structural polyprotein	protein	196	8% helix, 33% strand	Q80AG2

Pockets

10 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.65	0.95	23	empty
2	142	0.53	0.81	26	empty
3	230	0.48	0.74	36	empty
4	69	0.46	0.83	17	empty
5	65	0.46	0.82	16	empty

Interfaces

3 interfaces between chains.

A–C · 3755 Å² buried · 51 hydrogen bonds · protein-protein
C–B · 1338 Å² buried · 6 hydrogen bonds · protein-protein
A–B · 1016 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

7BE9 · Kashmir bee virus empty particle at acidic pH · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q80AG2
Elsewhere: RCSB PDB 7BE9 · PDBe 7BE9 · UniProt Q80AG2

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