MolNFT v1 · #173875 · protein
The adduct of nami-a with hen egg white lysozyme at 98 hours.
7BDM: “The adduct of nami-a with hen egg white lysozyme at 98 hours.”. X-ray diffraction, 3 ligands (NA, RU, CL). MolNFT v1 #173875 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7BDM
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysozyme
- EC
- 3.2.1.17
- UniProt
- P00698
- Ligands
- NA, RU, CL
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysozyme (EC 3.2.1.17) | protein | 129 | 41% helix, 11% strand | P00698 |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A
- RU · Ruthenium ion · metal · chains A
- CL · Chloride ion · ion · 6 copies · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 7BDM · The adduct of NAMI-A with Hen Egg White Lysozyme at 98 hours. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00698
- Elsewhere: RCSB PDB 7BDM · PDBe 7BDM · UniProt P00698
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