MolNFT v1 · #173842 · protein
Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain DPN7T in complex with xylonic acid
7BCN · Putative trap transporter solute receptor dctp: “Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain DPN7T in…”. X-ray diffraction, 1 ligand (TK8), 2 pockets (best druggability 0.73).…
- PDB
- 7BCN
- Type
- protein
- Length
- 310 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative trap transporter solute receptor dctp
- UniProt
- R4JTF7
- Ligands
- TK8
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative trap transporter solute receptor dctp | protein | 310 | 53% helix, 19% strand | R4JTF7 |
Ligands and binding sites
- TK8 · D-xylonic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 62 | 0.73 | 0.99 | 21 | TK8 |
| 2 | 91 | 0.54 | 0.84 | 33 | empty |
Compared structures
- 7BCN · Crystal structure of the sugar acid binding protein DctPAm from Advenella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt R4JTF7
- Elsewhere: RCSB PDB 7BCN · PDBe 7BCN · UniProt R4JTF7
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