MolNFT v1 · #173817 · protein
Neisseria gonorrhoeae transaldolase, variant C38S
7BBW: “Neisseria gonorrhoeae transaldolase, variant C38S”. X-ray diffraction, 8 pockets (best druggability 0.58). MolNFT v1 #173817 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7BBW
- Type
- protein
- Length
- 700 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transaldolase
- EC
- 2.2.1.2
- UniProt
- A0A1D3FXY0
- Pockets
- 8 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 59% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Transaldolase (EC 2.2.1.2) | protein | 350 | 59% helix, 11% strand | A0A1D3FXY0 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 269 | 0.58 | 0.78 | 28 | GOL |
| 2 | 334 | 0.56 | 0.75 | 48 | empty |
| 3 | 136 | 0.46 | 0.77 | 24 | empty |
| 4 | 113 | 0.43 | 0.77 | 25 | empty |
| 5 | 102 | 0.41 | 0.77 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 422 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 7BBW · Neisseria gonorrhoeae transaldolase, variant C38S · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1D3FXY0
- Elsewhere: RCSB PDB 7BBW · PDBe 7BBW · UniProt A0A1D3FXY0
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