MolNFT v1 · #173665 · protein
Room temperature X-ray structure of perdeuterated pll lectin in complex with L-fucose
7B7C: “Room temperature X-ray structure of perdeuterated pll lectin in complex with L-fucose”. X-ray diffraction, 2 ligands (FUL, FUC), 2 pockets (best druggability 0.79). MolNFT v1 #173665 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7B7C
- Type
- protein
- Length
- 354 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pll lectin
- UniProt
- A0A329WTS5
- Ligands
- FUL, FUC
- Pockets
- 2 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pll lectin | protein | 354 | 0% helix, 48% strand | A0A329WTS5 |
Ligands and binding sites
- FUL · beta-L-fucopyranose · sugar · 4 copies · chains A
- FUC · alpha-L-fucopyranose · sugar · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 833 | 0.79 | 0.82 | 44 | empty |
| 2 | 50 | 0.27 | 0.75 | 13 | empty |
Compared structures
- 7B7C · Room temperature X-ray structure of perdeuterated PLL lectin in complex with L-fucose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A329WTS5
- Elsewhere: RCSB PDB 7B7C · PDBe 7B7C · UniProt A0A329WTS5
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