MolNFT v1 · #173600 · protein

Structure of the M298L mutant of the streptomyces coelicolor small laccase T1 copper axial ligand

7B4Y · Putative copper oxidase: “Structure of the M298L mutant of the streptomyces coelicolor small laccase T1 copper axial ligand”. X-ray diffraction, 1 ligand (CU), 5 pockets (best druggability 0.61). MolNFT v1 #173600 on GenesisL1: 3D…

PDB: 7B4Y
Type: protein
Length: 554 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative copper oxidase
UniProt: Q9XAL8
Ligands: CU
Pockets: 5 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Putative copper oxidase	protein	277	5% helix, 42% strand	Q9XAL8

Ligands and binding sites

CU · Copper (II) ion · metal · 8 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	625	0.61	0.73	76	empty
2	54	0.31	0.76	14	empty
3	70	0.31	0.74	14	empty
4	67	0.29	0.74	15	empty
5	50	0.27	0.74	15	empty

Interfaces

1 interface between chains.

A–B · 1102 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

7B4Y · Structure of the M298L mutant of the Streptomyces coelicolor small laccase T1 copper… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9XAL8
Elsewhere: RCSB PDB 7B4Y · PDBe 7B4Y · UniProt Q9XAL8

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