MolNFT v1 · #173549 · protein
Crystal structure of myricetin covalently bound to the main protease (3CLPRO/MPRO) of SARS-cov-2
7B3E: “Crystal structure of myricetin covalently bound to the main protease (3CLPRO/MPRO) of SARS-cov-2”. X-ray diffraction, 3 ligands (MYC, NA, CL). MolNFT v1 #173549 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7B3E
- Type
- protein
- Length
- 602 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTD1
- Ligands
- MYC, NA, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 301 | — | P0DTD1 |
Ligands and binding sites
- MYC · 3,5,7-trihydroxy-2-(3,4,5-trihydroxyphenyl)-4H-chromen-4-one · ligand · 2 copies · chains A, B
- NA · Sodium ion · metal · chains B
- CL · Chloride ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 10 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7B3E · Crystal structure of myricetin covalently bound to the main protease (3CLpro/Mpro) of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 7B3E · PDBe 7B3E · UniProt P0DTD1
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