MolNFT v1 · #173505 · protein
Virulence-associated protein vapb from the intracellular pathogen rhodococcus equi
7B1Z · Virulence associated protein vapb: “Virulence-associated protein vapb from the intracellular pathogen rhodococcus equi”. X-ray diffraction, 1 ligand (NO3), 2 pockets (best druggability 0.57). MolNFT v1 #173505 on GenesisL1: 3D…
- PDB
- 7B1Z
- Type
- protein
- Length
- 218 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Virulence associated protein vapb
- UniProt
- B4F366
- Ligands
- NO3
- Pockets
- 2 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 72% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Virulence associated protein vapb | protein | 109 | 6% helix, 72% strand | B4F366 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 72 | 0.57 | 0.88 | 26 | empty |
| 2 | 65 | 0.30 | 0.74 | 20 | GOL |
Interfaces
1 interface between chains.
- A–B · 762 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 7B1Z · Virulence-associated protein VapB from the intracellular pathogen Rhodococcus equi · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B4F366
- Elsewhere: RCSB PDB 7B1Z · PDBe 7B1Z · UniProt B4F366
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