MolNFT v1 · #17349 · protein
Crystal structure of C73S mutant of putidaredoxin, a [2FE-2S] ferredoxin from pseudomonas putida, at 1.65A resolution
1OQR: “Crystal structure of C73S mutant of putidaredoxin, a [2FE-2S] ferredoxin from pseudomonas putida, at 1.65A…”. X-ray diffraction, 1 ligand (FES), 2 pockets (best druggability 0.44). MolNFT v1 #17349 on GenesisL1: 3D structure…
- PDB
- 1OQR
- Type
- protein
- Length
- 318 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putidaredoxin
- UniProt
- P00259
- Ligands
- FES
- Pockets
- 2 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Putidaredoxin | protein | 106 | 18% helix, 22% strand | P00259 |
Ligands and binding sites
- FES · Fe2/s2 (inorganic) cluster · ligand · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 113 | 0.44 | 0.78 | 19 | empty |
| 2 | 58 | 0.29 | 0.75 | 18 | empty |
Interfaces
2 interfaces between chains.
- A–C · 498 Ų buried · 6 hydrogen bonds · protein-protein
- A–B · 192 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 1OQR · Crystal structure of C73S mutant of putidaredoxin, a [2Fe-2S] ferredoxin from Pseudomonas… · the same entry in another collection · chain A against A, TM-score 1.00
- P00259 · AlphaFold monomer V2.0 prediction for putidaredoxin (P00259) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00259
- Elsewhere: RCSB PDB 1OQR · PDBe 1OQR · UniProt P00259
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