MolNFT v1 · #17341 · protein
Crystal structure of the sand domain from glucocorticoid modulatory element binding protein-1 (GMEB1)
1OQJ: “Crystal structure of the sand domain from glucocorticoid modulatory element binding protein-1 (GMEB1)”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.51). MolNFT v1 #17341 on GenesisL1: 3D structure, binding sites…
- PDB
- 1OQJ
- Type
- protein
- Length
- 179 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucocorticoid modulatory element binding protein-1
- UniProt
- Q9Y692
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.51
Structure
x-ray diffraction · 2 distinct chains · 25% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glucocorticoid modulatory element binding protein-1 | protein | 90 | 26% helix, 27% strand | Q9Y692 |
| B | Glucocorticoid modulatory element binding protein-1 | protein | 89 | 25% helix, 26% strand | Q9Y692 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 170 | 0.51 | 0.77 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 747 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 1OQJ · Crystal structure of the SAND domain from glucocorticoid modulatory element binding… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y692 · AlphaFold monomer V2.0 prediction for glucocorticoid modulatory element-binding protein 1… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y692
- Elsewhere: RCSB PDB 1OQJ · PDBe 1OQJ · UniProt Q9Y692
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.