MolNFT v1 · #173392 · protein
Crystal structure of the PDE4D catalytic domain in complex with gebr- 41B
7AY6: “Crystal structure of the PDE4D catalytic domain in complex with gebr- 41B”. X-ray diffraction, 3 ligands (S8Q, MG, ZN). MolNFT v1 #173392 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7AY6
- Type
- protein
- Length
- 659 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q08499
- Ligands
- S8Q, MG, ZN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 332 | — | Q08499 |
| B | — | protein | 327 | — | Q08499 |
Ligands and binding sites
- S8Q · 2-[(~{Z})-1-(3-cyclopentyloxy-4-methoxy-phenyl) ethylideneamino]oxy-1-[(2~{S},6~{S})-2,6-dimethylmorpholin-4-yl]ethanone · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 8 copies · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 14 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7AY6 · Crystal structure of the PDE4D catalytic domain in complex with GEBR-41b · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08499
- Elsewhere: RCSB PDB 7AY6 · PDBe 7AY6 · UniProt Q08499
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