MolNFT v1 · #173308 · protein
Structure of marine actinobacteria clade rhodopsin (macr) in orange form in P1 space group
7AVN: “Structure of marine actinobacteria clade rhodopsin (macr) in orange form in P1 space group”. X-ray diffraction, 2 ligands (LFA, OLB). MolNFT v1 #173308 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7AVN
- Type
- protein
- Length
- 434 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- S5DM51
- Ligands
- LFA, OLB
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 217 | — | S5DM51 |
Ligands and binding sites
- LFA · Eicosane · ligand · 26 copies · chains A, B
- OLB · (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · ligand · 2 copies · chains A, B
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7AVN · Structure of marine actinobacteria clade rhodopsin (MacR) in orange form in P1 space group · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt S5DM51
- Elsewhere: RCSB PDB 7AVN · PDBe 7AVN · UniProt S5DM51
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