MolNFT v1 · #173103 · protein
Helical arrangement of bunyamwera virus nucleocapsid protein within a native ribonucleoprotein
7AOY: “Helical arrangement of bunyamwera virus nucleocapsid protein within a native ribonucleoprotein”. Electron microscopy, 19 pockets (best druggability 0.56). MolNFT v1 #173103 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7AOY
- Type
- protein
- Length
- 2,052 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleoprotein
- UniProt
- P16495
- Pockets
- 19 · best druggability 0.56
Structure
electron microscopy · 1 distinct chain · 50% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A, C, D, E, F, G, H, I | Nucleoprotein | protein | 228 | 50% helix, 10% strand | P16495 |
Pockets
19 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 252 | 0.56 | 0.77 | 37 | empty |
| 2 | 181 | 0.55 | 0.80 | 32 | empty |
| 3 | 195 | 0.55 | 0.79 | 35 | empty |
| 4 | 194 | 0.54 | 0.78 | 33 | empty |
| 5 | 179 | 0.54 | 0.79 | 34 | empty |
Interfaces
8 interfaces between chains.
- F–G · 1292 Ų buried · 13 hydrogen bonds · protein-protein
- G–H · 1292 Ų buried · 13 hydrogen bonds · protein-protein
- E–F · 1292 Ų buried · 13 hydrogen bonds · protein-protein
- B–A · 1292 Ų buried · 13 hydrogen bonds · protein-protein
- C–D · 1291 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 7AOY · Helical arrangement of Bunyamwera virus nucleocapsid protein within a native… · the same entry in another collection · chain G against G, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P16495
- Elsewhere: RCSB PDB 7AOY · PDBe 7AOY · UniProt P16495
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