MolNFT v1 · #173054 · protein
Nonameric cytoplasmic domain of flha from vibrio parahaemolyticus
7AMY · Flagellar biosynthesis protein flha: “Nonameric cytoplasmic domain of flha from vibrio parahaemolyticus”. Electron microscopy, 20 pockets (best druggability 0.80). MolNFT v1 #173054 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7AMY
- Type
- protein
- Length
- 3,177 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagellar biosynthesis protein flha
- UniProt
- A0A0F5SXE4
- Pockets
- 20 · best druggability 0.80
Structure
electron microscopy · 1 distinct chain · 41% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I | Flagellar biosynthesis protein flha | protein | 353 | 41% helix, 13% strand | A0A0F5SXE4 |
Pockets
20 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 945 | 0.80 | 0.82 | 105 | empty |
| 2 | 862 | 0.79 | 0.82 | 90 | empty |
| 3 | 743 | 0.79 | 0.83 | 86 | empty |
| 4 | 809 | 0.78 | 0.82 | 96 | empty |
| 5 | 1024 | 0.78 | 0.80 | 87 | empty |
Interfaces
9 interfaces between chains.
- E–G · 1406 Ų buried · 9 hydrogen bonds · protein-protein
- A–I · 1405 Ų buried · 9 hydrogen bonds · protein-protein
- C–D · 1405 Ų buried · 9 hydrogen bonds · protein-protein
- H–I · 1405 Ų buried · 9 hydrogen bonds · protein-protein
- E–F · 1404 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 7AMY · Nonameric cytoplasmic domain of FlhA from Vibrio parahaemolyticus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0F5SXE4
- Elsewhere: RCSB PDB 7AMY · PDBe 7AMY · UniProt A0A0F5SXE4
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