MolNFT v1 · #172972 · protein
Structure of the SARS-cov-2 spike glycoprotein in complex with the 47D11 neutralizing antibody Fab fragment
7AKD: “Structure of the SARS-cov-2 spike glycoprotein in complex with the 47D11 neutralizing antibody Fab fragment”. Electron microscopy, 4 ligands (NAG, MAN, BMA). MolNFT v1 #172972 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7AKD
- Type
- protein
- Length
- 3,404 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, MAN, BMA, FUC
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 970 | — | P0DTC2 |
| B | — | protein | 990 | — | P0DTC2 |
| C | — | protein | 992 | — | P0DTC2 |
| D, H | — | protein | 120 | — | — |
| E, L | — | protein | 106 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 60 copies · chains A, B, H, L, C, D, E
- MAN · alpha-D-mannopyranose · sugar · 8 copies · chains E, D, H
- BMA · beta-D-mannopyranose · sugar · 6 copies · chains E
- FUC · alpha-L-fucopyranose · sugar · 5 copies · chains B, C, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7AKD · Structure of the SARS-CoV-2 spike glycoprotein in complex with the 47D11 neutralizing… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7AKD · PDBe 7AKD · UniProt P0DTC2
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