MolNFT v1 · #172959 · protein
The X-ray structure of L,D-transpeptidase ldta from vibrio cholerae in complex with nag-NAM(TETRAPEPTIDE)
7AJZ: “The X-ray structure of L,D-transpeptidase ldta from vibrio cholerae in complex with nag-NAM(TETRAPEPTIDE)”. X-ray diffraction, 2 ligands (AMV, API). MolNFT v1 #172959 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7AJZ
- Type
- protein
- Length
- 978 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A655UKB5
- Ligands
- AMV, API
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 484 | — | A0A655UKB5 |
| B | — | protein | 491 | — | A0A655UKB5 |
| C | — | protein | 3 | — | — |
Ligands and binding sites
- AMV · methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranoside · ligand · chains A, C
- API · 2,6-diaminopimelic acid · ligand · chains A, C
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7AJZ · The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A655UKB5
- Elsewhere: RCSB PDB 7AJZ · PDBe 7AJZ · UniProt A0A655UKB5
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