MolNFT v1 · #172858 · protein
Protease SAPP1P from candida parapsilosis in complex with KB70
7AGB: “Protease SAPP1P from candida parapsilosis in complex with KB70”. X-ray diffraction, 2 ligands (BOC, NA). MolNFT v1 #172858 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7AGB
- Type
- protein
- Length
- 1,376 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B8YPM3
- Ligands
- BOC, NA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 339 | — | B8YPM3 |
| I, J, K, L | — | protein | 5 | — | — |
Ligands and binding sites
- BOC · Tert-butyl hydrogen carbonate · ligand · 4 copies · chains A, I, B, J, C, K, D, L
- NA · Sodium ion · metal · 6 copies · chains A, B, C, D
- PGE · Triethylene glycol · additive · 11 copies · chains A, I, B, C, J, K, D, L
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 6 copies · chains A, D, B, C
- 1PE · Pentaethylene glycol · additive · 2 copies · chains A, D
- PE3 · 3,6,9,12,15,18,21,24,27,30,33,36,39-tridecaoxahentetracontane-1,41-diol · additive · chains B, J
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7AGB · Protease Sapp1p from Candida parapsilosis in complex with KB70 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B8YPM3
- Elsewhere: RCSB PDB 7AGB · PDBe 7AGB · UniProt B8YPM3
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