MolNFT v1 · #172822 · protein
Rebuilt and re-refined pdb entry 5YEP: tri-ampylated shewanella oneidensis hepn toxin in complex with mnt antitoxin
7AER: “Rebuilt and re-refined pdb entry 5YEP: tri-ampylated shewanella oneidensis hepn toxin in complex with mnt…”. X-ray diffraction, 1 ligand (AMP). MolNFT v1 #172822 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7AER
- Type
- protein
- Length
- 516 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8ECH7, Q8ECH6
- Ligands
- AMP
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 119 | — | Q8ECH7 |
| B | — | protein | 133 | — | Q8ECH6 |
| C, D | — | protein | 132 | — | Q8ECH6 |
Ligands and binding sites
- AMP · Adenosine monophosphate · ligand · 6 copies · chains B, A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7AER · Rebuilt and re-refined PDB entry 5yep: tri-AMPylated Shewanella oneidensis HEPN toxin in… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8ECH6 · AlphaFold monomer V2.0 prediction for mRNA nuclease hept (Q8ECH6) · a predicted model of the same protein · chain B against A, TM-score 0.97
- Q8ECH7 · AlphaFold monomer V2.0 prediction for protein adenylyltransferase mnta (Q8ECH7) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ECH7
- Every structure of UniProt Q8ECH6
- Elsewhere: RCSB PDB 7AER · PDBe 7AER · UniProt Q8ECH7 · UniProt Q8ECH6
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