MolNFT v1 · #172816 · protein
Crystal structure of asymmetric HIV-1 GP41 containing all membrane anchors
7AEJ · Envelope glycoprotein GP160,ENVELOPE glycoprotein GP160: “Crystal structure of asymmetric HIV-1 GP41 containing all membrane anchors”. X-ray diffraction, 8 pockets (best druggability 0.76). MolNFT v1 #172816 on GenesisL1: 3D…
- PDB
- 7AEJ
- Type
- protein
- Length
- 551 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Envelope glycoprotein GP160,ENVELOPE glycoprotein GP160; 2H10
- UniProt
- B2CPZ5
- Pockets
- 8 · best druggability 0.76
Structure
x-ray diffraction · 4 distinct chains · 71% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | Envelope glycoprotein GP160,ENVELOPE glycoprotein GP160 | protein | 156 | 91% helix, 0% strand | B2CPZ5 |
| A | Envelope glycoprotein GP160,ENVELOPE glycoprotein GP160 | protein | 129 | 81% helix, 0% strand | B2CPZ5 |
| B | Envelope glycoprotein GP160,ENVELOPE glycoprotein GP160 | protein | 145 | 97% helix, 0% strand | B2CPZ5 |
| D | 2H10 | protein | 121 | 5% helix, 50% strand | — |
Pockets
8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 177 | 0.76 | 0.92 | 33 | empty |
| 2 | 276 | 0.57 | 0.77 | 34 | empty |
| 3 | 107 | 0.48 | 0.80 | 18 | empty |
| 4 | 153 | 0.42 | 0.74 | 19 | empty |
| 5 | 101 | 0.41 | 0.77 | 15 | empty |
Interfaces
4 interfaces between chains.
- C–B · 2853 Ų buried · 15 hydrogen bonds · protein-protein
- A–B · 2015 Ų buried · 10 hydrogen bonds · protein-protein
- C–A · 2011 Ų buried · 16 hydrogen bonds · protein-protein
- A–D · 757 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 7AEJ · Crystal structure of asymmetric HIV-1 gp41 containing all membrane anchors · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2CPZ5
- Elsewhere: RCSB PDB 7AEJ · PDBe 7AEJ · UniProt B2CPZ5
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