MolNFT v1 · #172789 · protein

Structure of the mycoplasma mib and mip proteins

7ADK · Putative immunoglobulin-blocking virulence protein: “Structure of the mycoplasma mib and mip proteins”. Electron microscopy, 18 pockets (best druggability 0.80). MolNFT v1 #172789 on GenesisL1: 3D structure, binding sites and…

PDB: 7ADK
Type: protein
Length: 1,317 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative immunoglobulin-blocking virulence protein; Lipoprotein
UniProt: A0A446C0S7, A0A446C0V0
Pockets: 18 · best druggability 0.80

Structure

electron microscopy · 2 distinct chains · 27% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative immunoglobulin-blocking virulence protein	protein	613	30% helix, 17% strand	A0A446C0S7
B	Lipoprotein	protein	704	25% helix, 18% strand	A0A446C0V0

Pockets

18 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	462	0.80	0.88	62	empty
2	927	0.78	0.80	73	empty
3	68	0.74	0.98	21	empty
4	656	0.71	0.79	61	empty
5	776	0.69	0.76	86	empty

Interfaces

1 interface between chains.

A–B · 2182 Å² buried · 34 hydrogen bonds · protein-protein

Compared structures

7ADK · Structure of the mycoplasma MIB and MIP proteins · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A446C0S7
Every structure of UniProt A0A446C0V0
Elsewhere: RCSB PDB 7ADK · PDBe 7ADK · UniProt A0A446C0S7 · UniProt A0A446C0V0

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