MolNFT v1 · #17278 · DNA + RNA

DNA.RNA hybrid duplex containing a 5-propyne DNA strand and purine- rich RNA strand, NMR, 4 structures

1OO7 · 5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3': “DNA.RNA hybrid duplex containing a 5-propyne DNA strand and purine- rich RNA strand, NMR, 4 structures”. Solution nmr. MolNFT v1 #17278 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 1OO7
Type: DNA + RNA
Length: 20 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3'; 5'-D(*GP*(5PC)P*(PDU)P*(PDU)P*(5PC)P*(PDU)P*(5PC)P…

Structure

solution nmr · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	5'-R(GPAPAPGPAPGPAPAPGPC)-3'	rna	10	—	—
B	5'-D(GP(5PC)P(PDU)P(PDU)P(5PC)P(PDU)P(5PC)P(PDU) P(PDU)PC)-3'	dna	10	—	—

Interfaces

1 interface between chains.

A–B · 443 Å² buried · 44 hydrogen bonds · nucleic-nucleic

Modifications

Observed in the structure: 8 modified (nucleotide modification).

Compared structures

1OO7 · DNA.RNA hybrid duplex containing a 5-propyne DNA strand and purine-rich RNA strand, NMR… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1OO7 · PDBe 1OO7

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