MolNFT v1 · #172662 · protein
Crystal structure of the R395G mutant form of coronafacic acid ligase from pectobacterium brasiliense
7A9J · Cfl: “Crystal structure of the R395G mutant form of coronafacic acid ligase from pectobacterium brasiliense”. X-ray diffraction, 2 ligands (R4Z, PO4), 3 pockets (best druggability 0.62). MolNFT v1 #172662 on GenesisL1: 3D structure…
- PDB
- 7A9J
- Type
- protein
- Length
- 503 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cfl
- UniProt
- M4GWN4
- Ligands
- R4Z, PO4
- Pockets
- 3 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cfl | protein | 503 | 35% helix, 27% strand | M4GWN4 |
Ligands and binding sites
- R4Z · 6-ethyl-1-oxidanylidene-indene-4-carboxylic acid · ligand · chains A
- PO4 · Phosphate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 388 | 0.62 | 0.77 | 45 | empty |
| 2 | 405 | 0.61 | 0.76 | 58 | R4Z, PO4 |
| 3 | 116 | 0.41 | 0.76 | 22 | empty |
Compared structures
- 7A9J · Crystal structure of the R395G mutant form of Coronafacic Acid Ligase from Pectobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt M4GWN4
- Elsewhere: RCSB PDB 7A9J · PDBe 7A9J · UniProt M4GWN4
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