MolNFT v1 · #172639 · protein
Structure of recql from bos taurus
7A8R · ATP-dependent DNA helicase: “Structure of recql from bos taurus”. X-ray diffraction, 3 ligands (ADP, ZN, MG), 10 pockets (best druggability 0.80). MolNFT v1 #172639 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7A8R
- Type
- protein
- Length
- 1,061 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATP-dependent DNA helicase
- EC
- 3.6.4.12
- UniProt
- A0JN36
- Ligands
- ADP, ZN, MG
- Pockets
- 10 · best druggability 0.80
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ATP-dependent DNA helicase (EC 3.6.4.12) | protein | 531 | 43% helix, 17% strand | A0JN36 |
| B | ATP-dependent DNA helicase (EC 3.6.4.12) | protein | 530 | 43% helix, 18% strand | A0JN36 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 985 | 0.80 | 0.81 | 85 | ADP, MG |
| 2 | 1110 | 0.79 | 0.80 | 74 | ADP, MG |
| 3 | 963 | 0.78 | 0.80 | 106 | empty |
| 4 | 293 | 0.63 | 0.80 | 35 | empty |
| 5 | 242 | 0.49 | 0.74 | 45 | empty |
Interfaces
1 interface between chains.
- A–B · 1166 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 7A8R · Structure of RecQL from Bos taurus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0JN36
- Elsewhere: RCSB PDB 7A8R · PDBe 7A8R · UniProt A0JN36
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