MolNFT v1 · #17259 · protein

Ispc apo structure

1ONN · 1-deoxy-D-xylulose 5-phosphate reductoisomerase: “Ispc apo structure”. X-ray diffraction, 4 pockets (best druggability 0.78). MolNFT v1 #17259 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1ONN
Type: protein
Length: 778 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
EC: 1.1.1.267
UniProt: P45568
Pockets: 4 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 49% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	protein	389	49% helix, 15% strand	P45568

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	201	0.78	0.93	33	empty
2	459	0.63	0.77	58	empty
3	386	0.61	0.77	49	empty
4	70	0.33	0.75	21	empty

Interfaces

1 interface between chains.

A–B · 1629 Å² buried · 31 hydrogen bonds · protein-protein

Compared structures

1ONN · IspC apo structure · the same entry in another collection · chain A against A, TM-score 1.00
P45568 · AlphaFold monomer V2.0 prediction for 1-deoxy-D-xylulose 5-phosphate reductoisomerase… · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P45568
Elsewhere: RCSB PDB 1ONN · PDBe 1ONN · UniProt P45568

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