MolNFT v1 · #172353 · protein
Partial structure of the substrate-free tyrosine hydroxylase (apo-th).
6ZZU · Tyrosine 3-monooxygenase: “Partial structure of the substrate-free tyrosine hydroxylase (apo-th).”. Electron microscopy, 1 ligand (FE), 8 pockets (best druggability 0.81). MolNFT v1 #172353 on GenesisL1: 3D structure, binding sites…
- PDB
- 6ZZU
- Type
- protein
- Length
- 1,340 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tyrosine 3-monooxygenase
- EC
- 1.14.16.2
- UniProt
- P07101
- Ligands
- FE
- Pockets
- 8 · best druggability 0.81
Structure
electron microscopy · 1 distinct chain · 46% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A, C, D | Tyrosine 3-monooxygenase (EC 1.14.16.2) | protein | 335 | 46% helix, 11% strand | P07101 |
Ligands and binding sites
- FE · Fe (III) ion · metal · 4 copies · chains B, A, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 926 | 0.81 | 0.83 | 118 | empty |
| 2 | 402 | 0.79 | 0.88 | 58 | empty |
| 3 | 417 | 0.78 | 0.87 | 59 | empty |
| 4 | 483 | 0.76 | 0.84 | 63 | FE |
| 5 | 426 | 0.75 | 0.85 | 58 | FE |
Interfaces
6 interfaces between chains.
- A–D · 2146 Ų buried · 30 hydrogen bonds · protein-protein
- B–C · 2122 Ų buried · 27 hydrogen bonds · protein-protein
- C–D · 702 Ų buried · 12 hydrogen bonds · protein-protein
- B–A · 695 Ų buried · 10 hydrogen bonds · protein-protein
- B–D · 151 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6ZZU · Partial structure of the substrate-free tyrosine hydroxylase (apo-TH). · the same entry in another collection · chain B against B, TM-score 1.00
- P07101 · AlphaFold monomer V2.0 prediction for tyrosine 3-monooxygenase (P07101) · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07101
- Elsewhere: RCSB PDB 6ZZU · PDBe 6ZZU · UniProt P07101
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