MolNFT v1 · #172328 · protein
Structure of the borneol dehydrogenase of salvia rosmarinus (apo)
6ZZ0 · Borneol dehydrogenase (salvia rosmarinus) apo structure: “Structure of the borneol dehydrogenase of salvia rosmarinus (apo)”. X-ray diffraction, 16 pockets (best druggability 0.86). MolNFT v1 #172328 on GenesisL1: 3D structure…
- PDB
- 6ZZ0
- Type
- protein
- Length
- 997 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Borneol dehydrogenase (salvia rosmarinus) apo structure
- Pockets
- 16 · best druggability 0.86
Structure
x-ray diffraction · 4 distinct chains · 51% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Borneol dehydrogenase (salvia rosmarinus) apo structure | protein | 244 | 51% helix, 16% strand | — |
| B | Borneol dehydrogenase (salvia rosmarinus) apo structure | protein | 246 | 52% helix, 15% strand | — |
| C | Borneol dehydrogenase (salvia rosmarinus) apo structure | protein | 259 | 51% helix, 15% strand | — |
| D | Borneol dehydrogenase (salvia rosmarinus) apo structure | protein | 248 | 51% helix, 16% strand | — |
Pockets
16 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 919 | 0.86 | 0.88 | 63 | empty |
| 2 | 533 | 0.71 | 0.79 | 47 | empty |
| 3 | 254 | 0.64 | 0.81 | 41 | empty |
| 4 | 261 | 0.63 | 0.81 | 42 | empty |
| 5 | 206 | 0.55 | 0.78 | 38 | empty |
Interfaces
6 interfaces between chains.
- A–D · 1567 Ų buried · 8 hydrogen bonds · protein-protein
- B–C · 1559 Ų buried · 11 hydrogen bonds · protein-protein
- C–D · 1541 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 1489 Ų buried · 12 hydrogen bonds · protein-protein
- B–D · 964 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 6ZZ0 · Structure of the borneol dehydrogenase of Salvia rosmarinus (apo) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6ZZ0 · PDBe 6ZZ0
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