MolNFT v1 · #172302 · protein
Cryo-EM structure of mlafedb in complex with AMP-pnp
6ZY9: “Cryo-EM structure of mlafedb in complex with AMP-pnp”. Electron microscopy, 2 ligands (ANP, MG). MolNFT v1 #172302 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ZY9
- Type
- protein
- Length
- 1,985 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- D6IEA5, W8T4U6, V0AC37, I2X585
- Ligands
- ANP, MG
Structure
electron microscopy · 12 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 132 | — | D6IEA5 |
| D | — | protein | 108 | — | D6IEA5 |
| I | — | protein | 131 | — | D6IEA5 |
| J | — | protein | 136 | — | D6IEA5 |
| K | — | protein | 127 | — | D6IEA5 |
| L | — | protein | 129 | — | D6IEA5 |
| B | — | protein | 93 | — | W8T4U6 |
| C | — | protein | 96 | — | W8T4U6 |
| F | — | protein | 258 | — | V0AC37 |
| G | — | protein | 260 | — | V0AC37 |
| E | — | protein | 256 | — | I2X585 |
| H | — | protein | 259 | — | I2X585 |
Ligands and binding sites
- ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · 2 copies · chains F, G
- MG · Magnesium ion · metal · 2 copies · chains F, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ZY9 · Cryo-EM structure of MlaFEDB in complex with AMP-PNP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D6IEA5
- Every structure of UniProt W8T4U6
- Every structure of UniProt V0AC37
- Every structure of UniProt I2X585
- Elsewhere: RCSB PDB 6ZY9 · PDBe 6ZY9 · UniProt D6IEA5 · UniProt W8T4U6 · UniProt V0AC37 · UniProt I2X585
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