MolNFT v1 · #172296 · protein

Cryo-EM structure of mlafedb in complex with phospholipid

6ZY3: “Cryo-EM structure of mlafedb in complex with phospholipid”. Electron microscopy, 1 ligand (PEE). MolNFT v1 #172296 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6ZY3
Type: protein
Length: 2,071 residues
Chains: 12
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: D6IEA5, W8T4U6, V0AC37, I2X585
Ligands: PEE

Structure

electron microscopy · 12 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	144	—	D6IEA5
D	—	protein	131	—	D6IEA5
I	—	protein	135	—	D6IEA5
J	—	protein	144	—	D6IEA5
K	—	protein	145	—	D6IEA5
L	—	protein	140	—	D6IEA5
B	—	protein	98	—	W8T4U6
C	—	protein	95	—	W8T4U6
F	—	protein	261	—	V0AC37
G	—	protein	262	—	V0AC37
E	—	protein	258	—	I2X585
H	—	protein	258	—	I2X585

Ligands and binding sites

PEE · 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine · ligand · chains E, H

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6ZY3 · Cryo-EM structure of MlaFEDB in complex with phospholipid · the same entry in another collection · chain E against E, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D6IEA5
Every structure of UniProt W8T4U6
Every structure of UniProt V0AC37
Every structure of UniProt I2X585
Elsewhere: RCSB PDB 6ZY3 · PDBe 6ZY3 · UniProt D6IEA5 · UniProt W8T4U6 · UniProt V0AC37 · UniProt I2X585

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