MolNFT v1 · #172291 · protein

Structure of archaeoglobus fulgidus TRM11 M2G10 tRNA methyltransferase enzyme

6ZXY · TRNA (GUANINE(10)-N2)-dimethyltransferase: “Structure of archaeoglobus fulgidus TRM11 M2G10 tRNA methyltransferase enzyme”. X-ray diffraction, 2 pockets (best druggability 0.70). MolNFT v1 #172291 on GenesisL1: 3D structure, binding…

PDB: 6ZXY
Type: protein
Length: 321 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: TRNA (GUANINE(10)-N2)-dimethyltransferase
UniProt: A0A117KU88
Pockets: 2 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	TRNA (GUANINE(10)-N2)-dimethyltransferase	protein	321	30% helix, 36% strand	A0A117KU88

Ligands and binding sites

EDO · 1,2-ethanediol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	85	0.70	0.94	23	empty
2	107	0.40	0.76	20	empty

Compared structures

6ZXY · Structure of Archaeoglobus fulgidus Trm11 m2G10 tRNA methyltransferase enzyme · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A117KU88
Elsewhere: RCSB PDB 6ZXY · PDBe 6ZXY · UniProt A0A117KU88

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