MolNFT v1 · #172166 · protein
Assembly intermediates of orthoreovirus captured in the cell
6ZTS · Lambda-1: “Assembly intermediates of orthoreovirus captured in the cell”. Electron microscopy, 20 pockets (best druggability 0.90). MolNFT v1 #172166 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ZTS
- Type
- protein
- Length
- 1,941 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lambda-1
- UniProt
- A0A023VYS9
- Pockets
- 20 · best druggability 0.90
Structure
electron microscopy · 2 distinct chains · 34% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lambda-1 | protein | 974 | 33% helix, 13% strand | A0A023VYS9 |
| B | Lambda-1 | protein | 967 | 35% helix, 11% strand | A0A023VYS9 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1115 | 0.90 | 0.92 | 159 | empty |
| 2 | 754 | 0.90 | 0.94 | 124 | empty |
| 3 | 1138 | 0.90 | 0.91 | 162 | empty |
| 4 | 1044 | 0.88 | 0.89 | 129 | empty |
| 5 | 332 | 0.86 | 0.95 | 52 | empty |
Interfaces
1 interface between chains.
- A–B · 947 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 6ZTS · Assembly intermediates of orthoreovirus captured in the cell · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A023VYS9
- Elsewhere: RCSB PDB 6ZTS · PDBe 6ZTS · UniProt A0A023VYS9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.