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MolNFT v1 · #172065 · protein

Crystal structure of angiotensin-1 converting enzyme C-domain with inserted symmetry molecule C-terminus.

6ZPU · Angiotensin-converting enzyme: “Crystal structure of angiotensin-1 converting enzyme C-domain with inserted symmetry molecule C-terminus.”. X-ray diffraction, 6 ligands (NAG, BMA, MAN), 3 pockets (best druggability 0.83). MolNFT v1…

PDB
6ZPU
Type
protein
Length
587 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Angiotensin-converting enzyme
EC
3.2.1.-, 3.4.15.1
UniProt
P12821
Ligands
NAG, BMA, MAN, FUC, ZN, CL
Pockets
3 · best druggability 0.83

Structure

x-ray diffraction · 1 distinct chain · 63% helix, 3% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AAngiotensin-converting enzyme (EC 3.2.1.-, 3.4.15.1)protein58763% helix, 3% strandP12821

Ligands and binding sites

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains A
  • BMA · beta-D-mannopyranose · sugar · 2 copies
  • MAN · alpha-D-mannopyranose · sugar · 2 copies · chains A
  • FUC · alpha-L-fucopyranose · sugar · chains A
  • ZN · Zinc ion · metal · chains A
  • CL · Chloride ion · ion · 2 copies · chains A
  • EDO · 1,2-ethanediol · additive · 3 copies · chains A
  • ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
14300.830.9152ACT
24080.800.8961empty
3970.370.7521empty

Modifications

Observed in the structure: 3 disulfide, 2 glycan (disulfide, N-glycosylation).

Compared structures

  • 6ZPU · Crystal structure of Angiotensin-1 converting enzyme C-domain with inserted symmetry… · the same entry in another collection · chain A against A, TM-score 1.00
  • P12821 · AlphaFold monomer V2.0 prediction for angiotensin-converting enzyme (P12821) · a predicted model of the same protein · chain A against A, TM-score 0.98

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