MolNFT v1 · #172059 · protein

Crystal structure of chaetomium thermophilum raptor

6ZPN · WD_REPEATS_REGION domain-containing protein: “Crystal structure of chaetomium thermophilum raptor”. X-ray diffraction, 20 pockets (best druggability 0.84). MolNFT v1 #172059 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 6ZPN
Type: protein
Length: 2,158 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: WD_REPEATS_REGION domain-containing protein
UniProt: G0S1S2
Pockets: 20 · best druggability 0.84

Structure

x-ray diffraction · 2 distinct chains · 40% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	WD_REPEATS_REGION domain-containing protein	protein	1079	39% helix, 19% strand	G0S1S2
B	WD_REPEATS_REGION domain-containing protein	protein	1079	40% helix, 19% strand	G0S1S2

Pockets

20 pockets found on a 1 Å grid, 11 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1048	0.84	0.85	84	empty
2	928	0.82	0.84	73	empty
3	923	0.82	0.83	90	empty
4	596	0.68	0.77	56	empty
5	331	0.67	0.81	38	empty

Interfaces

1 interface between chains.

A–B · 1849 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

6ZPN · Crystal structure of Chaetomium thermophilum Raptor · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G0S1S2
Elsewhere: RCSB PDB 6ZPN · PDBe 6ZPN · UniProt G0S1S2

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