MolNFT v1 · #171966 · protein + DNA
Crystal structure of the SMAD3-SMAD5 MH1 domain chimera bound to the ggcgc site
6ZMN: “Crystal structure of the SMAD3-SMAD5 MH1 domain chimera bound to the ggcgc site”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #171966 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ZMN
- Type
- protein + DNA
- Length
- 271 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P84022
- Ligands
- ZN
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 120 | — | P84022 |
| B | — | protein | 119 | — | P84022 |
| C, D | — | dna | 16 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
- ACT · Acetate ion · additive · chains A
- EDO · 1,2-ethanediol · additive · chains A
- PGE · Triethylene glycol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ZMN · Crystal structure of the Smad3-Smad5 MH1 domain chimera bound to the GGCGC site · the same entry in another collection · chain A against A, TM-score 1.00
- P84022 · AlphaFold monomer V2.0 prediction for mothers against decapentaplegic homolog 3 (P84022) · a predicted model of the same protein · chain A against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P84022
- Elsewhere: RCSB PDB 6ZMN · PDBe 6ZMN · UniProt P84022
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