MolNFT v1 · #171785 · protein
Structure of dps determined by movement-free cryoem with zero dose extrapolation
6ZGL · DNA protection during starvation protein: “Structure of dps determined by movement-free cryoem with zero dose extrapolation”. Electron microscopy, 20 pockets (best druggability 0.54). MolNFT v1 #171785 on GenesisL1: 3D structure…
- PDB
- 6ZGL
- Type
- protein
- Length
- 1,848 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA protection during starvation protein
- UniProt
- A0A073HPB2
- Pockets
- 20 · best druggability 0.54
Structure
electron microscopy · 1 distinct chain · 74% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L | DNA protection during starvation protein | protein | 154 | 74% helix, 1% strand | A0A073HPB2 |
Pockets
20 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 237 | 0.54 | 0.77 | 24 | empty |
| 2 | 264 | 0.54 | 0.76 | 22 | empty |
| 3 | 240 | 0.53 | 0.77 | 24 | empty |
| 4 | 226 | 0.52 | 0.77 | 24 | empty |
| 5 | 196 | 0.48 | 0.76 | 40 | empty |
Interfaces
30 interfaces between chains.
- A–C · 1586 Ų buried · 22 hydrogen bonds · protein-protein
- I–K · 1586 Ų buried · 22 hydrogen bonds · protein-protein
- J–L · 1585 Ų buried · 22 hydrogen bonds · protein-protein
- E–G · 1584 Ų buried · 22 hydrogen bonds · protein-protein
- F–H · 1581 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
- 6ZGL · Structure of DPS determined by movement-free cryoEM with zero dose extrapolation · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A073HPB2
- Elsewhere: RCSB PDB 6ZGL · PDBe 6ZGL · UniProt A0A073HPB2
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