MolNFT v1 · #171697 · protein
Association of three complexes of largely structurally disordered spike ectodomain with bound EY6A Fab
6ZDG: “Association of three complexes of largely structurally disordered spike ectodomain with bound EY6A Fab”. Electron microscopy, 1 ligand (NAG). MolNFT v1 #171697 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ZDG
- Type
- protein
- Length
- 1,884 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| E, A, D | — | protein | 194 | — | P0DTC2 |
| H, B, F | — | protein | 219 | — | — |
| L, C, G | — | protein | 215 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains E, A, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ZDG · Association of three complexes of largely structurally disordered Spike ectodomain with… · the same entry in another collection · chain E against E, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 6ZDG · PDBe 6ZDG · UniProt P0DTC2
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