MolNFT v1 · #171693 · protein

NMR structural analysis of yeast COX13 reveals its C-terminus in interaction with ATP

6ZDB · Cytochrome C oxidase subunit 13, mitochondrial: “NMR structural analysis of yeast COX13 reveals its C-terminus in interaction with ATP”. Solution nmr, 2 pockets (best druggability 0.34). MolNFT v1 #171693 on GenesisL1: 3D structure…

PDB: 6ZDB
Type: protein
Length: 258 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C oxidase subunit 13, mitochondrial
UniProt: P32799
Pockets: 2 · best druggability 0.34

Structure

solution nmr · 1 distinct chain · 48% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Cytochrome C oxidase subunit 13, mitochondrial	protein	129	48% helix, 0% strand	P32799

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	88	0.34	0.74	17	empty
2	59	0.34	0.77	15	empty

Interfaces

1 interface between chains.

A–B · 423 Å² buried · 2 hydrogen bonds · protein-protein

Compared structures

6ZDB · NMR structural analysis of yeast Cox13 reveals its C-terminus in interaction with ATP · the same entry in another collection · chain A against A, TM-score 1.00
P32799 · AlphaFold monomer V2.0 prediction for cytochrome C oxidase subunit 13, mitochondrial… · a predicted model of the same protein · chain A against A, TM-score 0.36

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P32799
Elsewhere: RCSB PDB 6ZDB · PDBe 6ZDB · UniProt P32799

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