MolNFT v1 · #17160 · protein

NMR-structure of tryparedoxin 1

1OKD: “NMR-structure of tryparedoxin 1”. Solution nmr, 1 pocket (best druggability 0.59). MolNFT v1 #17160 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1OKD
Type: protein
Length: 147 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tryparedoxin 1
UniProt: O96438
Pockets: 1 · best druggability 0.59

Structure

solution nmr · 1 distinct chain · 35% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tryparedoxin 1	protein	147	35% helix, 19% strand	O96438

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	75	0.59	0.88	18	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

1OKD · NMR-structure of tryparedoxin 1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O96438
Elsewhere: RCSB PDB 1OKD · PDBe 1OKD · UniProt O96438

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