MolNFT v1 · #171570 · protein
Copper transporter oprc
6Z9N · Putative copper transport outer membrane porin oprc: “Copper transporter oprc”. X-ray diffraction, 1 ligand (CU), 20 pockets (best druggability 0.85). MolNFT v1 #171570 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Z9N
- Type
- protein
- Length
- 2,607 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative copper transport outer membrane porin oprc
- UniProt
- G3XD89
- Ligands
- CU
- Pockets
- 20 · best druggability 0.85
Structure
x-ray diffraction · 4 distinct chains · 4% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative copper transport outer membrane porin oprc | protein | 648 | 3% helix, 55% strand | G3XD89 |
| B | Putative copper transport outer membrane porin oprc | protein | 657 | 4% helix, 57% strand | G3XD89 |
| C | Putative copper transport outer membrane porin oprc | protein | 644 | 4% helix, 56% strand | G3XD89 |
| D | Putative copper transport outer membrane porin oprc | protein | 658 | 4% helix, 57% strand | G3XD89 |
Ligands and binding sites
- CU · Copper (II) ion · metal · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 286 | 0.85 | 0.96 | 56 | empty |
| 2 | 234 | 0.84 | 0.97 | 39 | empty |
| 3 | 266 | 0.84 | 0.95 | 47 | empty |
| 4 | 241 | 0.84 | 0.96 | 45 | empty |
| 5 | 281 | 0.83 | 0.95 | 50 | empty |
Interfaces
3 interfaces between chains.
- C–D · 682 Ų buried · 12 hydrogen bonds · protein-protein
- A–B · 674 Ų buried · 13 hydrogen bonds · protein-protein
- B–C · 340 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6Z9N · Copper transporter OprC · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G3XD89
- Elsewhere: RCSB PDB 6Z9N · PDBe 6Z9N · UniProt G3XD89
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