MolNFT v1 · #171559 · protein

Structure of human POLDIP2, a multifaceted adaptor protein in metabolism and genome stability

6Z9C · Polymerase delta-interacting protein 2: “Structure of human POLDIP2, a multifaceted adaptor protein in metabolism and genome stability”. X-ray diffraction, 1 ligand (NA), 1 pocket (best druggability 0.44). MolNFT v1 #171559 on…

PDB: 6Z9C
Type: protein
Length: 258 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polymerase delta-interacting protein 2
UniProt: Q9Y2S7
Ligands: NA
Pockets: 1 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 51% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Polymerase delta-interacting protein 2	protein	258	8% helix, 51% strand	Q9Y2S7

Ligands and binding sites

NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	120	0.44	0.77	22	empty

Compared structures

6Z9C · Structure of human POLDIP2, a multifaceted adaptor protein in metabolism and genome… · the same entry in another collection · chain A against A, TM-score 1.00
Q9Y2S7 · AlphaFold monomer V2.0 prediction for polymerase delta-interacting protein 2 (Q9Y2S7) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9Y2S7
Elsewhere: RCSB PDB 6Z9C · PDBe 6Z9C · UniProt Q9Y2S7

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