MolNFT v1 · #171542 · protein

Copper transporter oprc

6Z8U · Putative copper transport outer membrane porin oprc: “Copper transporter oprc”. X-ray diffraction, 1 ligand (AG), 20 pockets (best druggability 0.84). MolNFT v1 #171542 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6Z8U
Type: protein
Length: 1,305 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative copper transport outer membrane porin oprc
UniProt: G3XD89
Ligands: AG
Pockets: 20 · best druggability 0.84

Structure

x-ray diffraction · 2 distinct chains · 4% helix, 57% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative copper transport outer membrane porin oprc	protein	649	4% helix, 57% strand	G3XD89
B	Putative copper transport outer membrane porin oprc	protein	656	5% helix, 56% strand	G3XD89

Ligands and binding sites

AG · Silver ion · metal · 6 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

20 pockets found on a 1 Å grid, 15 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	237	0.84	0.97	41	empty
2	261	0.84	0.96	42	empty
3	253	0.83	0.95	39	empty
4	178	0.81	0.96	31	empty
5	1188	0.78	0.80	79	AG

Interfaces

1 interface between chains.

A–B · 659 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

6Z8U · Copper transporter OprC · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G3XD89
Elsewhere: RCSB PDB 6Z8U · PDBe 6Z8U · UniProt G3XD89

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