MolNFT v1 · #171532 · protein
Fructo-oligosaccharide transporter bt 1762-63
6Z8I · Susd homolog: “Fructo-oligosaccharide transporter bt 1762-63”. X-ray diffraction, 2 ligands (MG, PO4), 17 pockets (best druggability 0.83). MolNFT v1 #171532 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Z8I
- Type
- protein
- Length
- 1,360 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Susd homolog; Susc homolog
- UniProt
- Q8A6W4, Q8A6W3
- Ligands
- MG, PO4
- Pockets
- 17 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 24% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Susd homolog | protein | 553 | 44% helix, 9% strand | Q8A6W4 |
| B | Susc homolog | protein | 807 | 11% helix, 50% strand | Q8A6W3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
17 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 181 | 0.83 | 0.97 | 45 | empty |
| 2 | 770 | 0.73 | 0.79 | 88 | empty |
| 3 | 606 | 0.70 | 0.79 | 78 | empty |
| 4 | 257 | 0.61 | 0.80 | 35 | empty |
| 5 | 209 | 0.59 | 0.81 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 4359 Ų buried · 68 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 6Z8I · Fructo-oligosaccharide transporter BT 1762-63 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8A6W4
- Every structure of UniProt Q8A6W3
- Elsewhere: RCSB PDB 6Z8I · PDBe 6Z8I · UniProt Q8A6W4 · UniProt Q8A6W3
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