MolNFT v1 · #171530 · protein
Crystal structure of VSG13 soaked in 0.5 M used to phase VSG13 to solve the structure.
6Z8G: “Crystal structure of VSG13 soaked in 0.5 M used to phase VSG13 to solve the structure.”. X-ray diffraction, 5 ligands (NAG, BMA, MAN). MolNFT v1 #171530 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Z8G
- Type
- protein
- Length
- 695 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q58NS4
- Ligands
- NAG, BMA, MAN, BR, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 346 | — | Q58NS4 |
| B | — | protein | 349 | — | Q58NS4 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A, B
- BMA · beta-D-mannopyranose · sugar · 2 copies · chains B, A
- MAN · alpha-D-mannopyranose · sugar · 2 copies · chains B, A
- BR · Bromide ion · ion · 23 copies · chains A, B
- SO4 · Sulfate ion · ion · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Z8G · Crystal structure of VSG13 soaked in 0.5 M used to phase VSG13 to solve the structure. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q58NS4
- Elsewhere: RCSB PDB 6Z8G · PDBe 6Z8G · UniProt Q58NS4
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