MolNFT v1 · #171529 · protein

Human picobirnavirus D45-cp vlp

6Z8F · Capsid protein precursor: “Human picobirnavirus D45-cp vlp”. Electron microscopy, 14 pockets (best druggability 0.70). MolNFT v1 #171529 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6Z8F
Type: protein
Length: 1,011 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Capsid protein precursor
UniProt: Q50LE5
Pockets: 14 · best druggability 0.70

Structure

electron microscopy · 2 distinct chains · 36% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Capsid protein precursor	protein	504	35% helix, 20% strand	Q50LE5
B	Capsid protein precursor	protein	507	37% helix, 20% strand	Q50LE5

Pockets

14 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	292	0.70	0.84	47	empty
2	348	0.64	0.79	61	empty
3	68	0.63	0.92	18	empty
4	85	0.43	0.79	15	empty
5	83	0.43	0.79	16	empty

Interfaces

1 interface between chains.

A–B · 5213 Å² buried · 56 hydrogen bonds · protein-protein

Compared structures

6Z8F · Human Picobirnavirus D45-CP VLP · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q50LE5
Elsewhere: RCSB PDB 6Z8F · PDBe 6Z8F · UniProt Q50LE5

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