MolNFT v1 · #171499 · protein
Variant surface glycoprotein vsgsur mutant H122A soaked in 0.77 mm suramin.
6Z7D · Variant surface glycoprotein sur: “Variant surface glycoprotein vsgsur mutant H122A soaked in 0.77 mm suramin.”. X-ray diffraction, 3 ligands (MAN, NAG, BMA). MolNFT v1 #171499 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6Z7D
- Type
- protein
- Length
- 359 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Variant surface glycoprotein sur
- UniProt
- A0A291L8F4
- Ligands
- MAN, NAG, BMA
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Variant surface glycoprotein sur | protein | 359 | 50% helix, 14% strand | A0A291L8F4 |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 3 copies · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- BMA · beta-D-mannopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 3 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 6Z7D · Variant Surface Glycoprotein VSGsur mutant H122A soaked in 0.77 mM Suramin. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A291L8F4
- Elsewhere: RCSB PDB 6Z7D · PDBe 6Z7D · UniProt A0A291L8F4
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