MolNFT v1 · #171431 · protein

X-ray crystallographic structure of ORF9B from SARS-cov-2

6Z4U · Protein 9B: “X-ray crystallographic structure of ORF9B from SARS-cov-2”. X-ray diffraction, 3 pockets (best druggability 0.77). MolNFT v1 #171431 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6Z4U
Type: protein
Length: 166 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein 9B
UniProt: P0DTD2
Pockets: 3 · best druggability 0.77

Structure

x-ray diffraction · 2 distinct chains · 5% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein 9B	protein	84	7% helix, 51% strand	P0DTD2
B	Protein 9B	protein	82	4% helix, 56% strand	P0DTD2

Ligands and binding sites

15P · Polyethylene glycol (N=34) · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	166	0.77	0.92	24	15P
2	61	0.35	0.76	12	empty
3	58	0.32	0.75	13	empty

Interfaces

1 interface between chains.

A–B · 1545 Å² buried · 32 hydrogen bonds · protein-protein

Compared structures

6Z4U · X-ray Crystallographic Structure of Orf9b from SARS-CoV-2 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0DTD2
Elsewhere: RCSB PDB 6Z4U · PDBe 6Z4U · UniProt P0DTD2

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