MolNFT v1 · #171416 · protein
The low resolution structure of a zinc-dependent alcohol dehydrogenase from halomonas elongata.
6Z42 · Alcohol dehydrogenase, zinc-containing: “The low resolution structure of a zinc-dependent alcohol dehydrogenase from halomonas elongata.”. X-ray diffraction, 1 ligand (ZN), 20 pockets (best druggability 0.84). MolNFT v1 #171416 on…
- PDB
- 6Z42
- Type
- protein
- Length
- 1,318 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alcohol dehydrogenase, zinc-containing
- EC
- 1.1.1.1
- UniProt
- E1V3M3
- Ligands
- ZN
- Pockets
- 20 · best druggability 0.84
Structure
x-ray diffraction · 4 distinct chains · 32% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alcohol dehydrogenase, zinc-containing (EC 1.1.1.1) | protein | 336 | 30% helix, 27% strand | E1V3M3 |
| B | Alcohol dehydrogenase, zinc-containing (EC 1.1.1.1) | protein | 334 | 32% helix, 24% strand | E1V3M3 |
| C | Alcohol dehydrogenase, zinc-containing (EC 1.1.1.1) | protein | 319 | 34% helix, 23% strand | E1V3M3 |
| D | Alcohol dehydrogenase, zinc-containing (EC 1.1.1.1) | protein | 329 | 33% helix, 26% strand | E1V3M3 |
Ligands and binding sites
- ZN · Zinc ion · metal · 8 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 15 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 958 | 0.84 | 0.86 | 126 | empty |
| 2 | 696 | 0.80 | 0.85 | 100 | empty |
| 3 | 985 | 0.80 | 0.81 | 86 | empty |
| 4 | 258 | 0.73 | 0.87 | 47 | empty |
| 5 | 617 | 0.73 | 0.80 | 61 | empty |
Interfaces
6 interfaces between chains.
- C–D · 1686 Ų buried · 15 hydrogen bonds · protein-protein
- A–B · 1678 Ų buried · 22 hydrogen bonds · protein-protein
- A–D · 528 Ų buried · 1 hydrogen bond · protein-protein
- B–C · 527 Ų buried · 1 hydrogen bond · protein-protein
- B–D · 493 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 6Z42 · The low resolution structure of a zinc-dependent alcohol dehydrogenase from Halomonas… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E1V3M3
- Elsewhere: RCSB PDB 6Z42 · PDBe 6Z42 · UniProt E1V3M3
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